manifest file : absolute-path vs absolute-filepath

[RachBioHaz]

Hi,
I just wanted to know if there was a specific flag I should be using to have the manifest file column labelled with absolute-filepath instead of absolute-path.

The command I'm using is:

seqfu metadata ~/Project/NL3/01Raw/  > ~/Project/NL3/01Raw/manifest.tsv

The manifest file is created:
first column header = sample-id
second column header = absolute-path (should be absolute-filepath)

Thanks for your help.

[telatin]

Thanks for reporting, will look into this and either fix or add a flag for it!

[telatin]

Found the issue
Can you confirm you have single end reads in that directory please?

[RachBioHaz]

Hi, sorry for the delay - have been away. Yes, the reads are single end reads.
Cheers