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@theislab

Theis Lab

Theis Lab at Institute of Computational Biology, Helmholtz Munich

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  1. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 1.2k 267

  2. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 496 111

  3. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 403 70

  4. scib scib Public

    Benchmarking analysis of data integration tools

    Python 411 76

  5. ehrapy ehrapy Public

    Electronic Health Record Analysis with Python.

    Python 343 45

  6. moscot moscot Public

    Multi-omic single-cell optimal transport tools

    Python 205 17

Repositories

Showing 10 of 255 repositories
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 62 BSD-3-Clause 5 4 2 Updated Apr 21, 2026
  • scConcept Public

    Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction

    theislab/scConcept’s past year of commit activity
    Python 25 MIT 3 0 0 Updated Apr 21, 2026
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 343 Apache-2.0 45 20 4 Updated Apr 21, 2026
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 8 0 1 0 Updated Apr 21, 2026
  • archmap_data Public
    theislab/archmap_data’s past year of commit activity
    Python 1 0 1 1 Updated Apr 21, 2026
  • scRatio Public
    theislab/scRatio’s past year of commit activity
    Jupyter Notebook 4 Apache-2.0 0 0 0 Updated Apr 21, 2026
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 5 4 0 Updated Apr 20, 2026
  • troutpy Public

    Package for the analysis of Transcripts outside segmented cells in ST data

    theislab/troutpy’s past year of commit activity
    Jupyter Notebook 28 BSD-3-Clause 2 0 2 Updated Apr 20, 2026
  • spatialdata-db Public
    theislab/spatialdata-db’s past year of commit activity
    Jupyter Notebook 10 BSD-3-Clause 1 26 3 Updated Apr 20, 2026
  • moscot Public

    Multi-omic single-cell optimal transport tools

    theislab/moscot’s past year of commit activity
    Python 205 BSD-3-Clause 17 31 5 Updated Apr 20, 2026
View all repositories

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