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6c58f92
First draft of nicely styled team page:
davidorme Jan 21, 2025
6755cd8
Narrower image
davidorme Jan 21, 2025
2d87ae0
Updated copyright info
davidorme Jan 23, 2025
7c51a4d
I forgot Anna...
davidorme Jan 23, 2025
4f51647
Vivienne added photo and short description
vgro Jan 28, 2025
434e5e2
replaced photo with smaller version
vgro Jan 28, 2025
3f5958b
Added myself (JC) to the new project team page
jacobcook1995 Feb 7, 2025
14b5590
Merge branch 'develop' into 688-update-project-team
jacobcook1995 Feb 7, 2025
eb90993
Adding myself to the team page.
sallymatson Feb 11, 2025
bb51d55
Edited photo
sallymatson Feb 11, 2025
7803350
Fixed file path.
sallymatson Feb 11, 2025
4f9cf5b
Removed unused tag to fix build tests.
sallymatson Feb 12, 2025
e56b158
add Hao Ran to the team page, and make Dr. titles consistent
hrlai Feb 15, 2025
10cebf4
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 15, 2025
868bc19
forgot to update profile pic path
hrlai Feb 15, 2025
c1f2059
Merge branch '688-update-project-team' of https://github.com/Imperial…
hrlai Feb 15, 2025
f2a9531
Adding team details for Arne
arne-exe Feb 17, 2025
46fb801
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 17, 2025
4471c61
Added my (Taran's) bio.
TaranRallings Feb 17, 2025
65b6d3b
Merge branch 'develop' into 688-update-project-team
davidorme Feb 17, 2025
97f22d4
Added Taran's picture.
TaranRallings Feb 17, 2025
ed28183
Merge branch '688-update-project-team' of https://github.com/Imperial…
TaranRallings Feb 17, 2025
ddf3050
Adding team details for Dr. Lelavathy Samikan Mazilamani
lelavathy Feb 18, 2025
d38cf63
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 18, 2025
43877df
Dr. Lelavathy Samikan Mazilamani
lelavathy Feb 18, 2025
b61e4cf
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 18, 2025
c1b8b78
bio_lela
lelavathy Mar 5, 2025
92e3c79
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 5, 2025
8e207dd
Fixed photo link
sallymatson Mar 6, 2025
6ed4ce6
Adding team details for Siti Nor Baizurah
Baizurah Mar 8, 2025
5279ed0
Adding team details for Siti Nor Baizurah
Baizurah Mar 8, 2025
6e56750
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 8, 2025
ece6e8c
Update grid item card for Siti Nor Baizurah
Baizurah Mar 8, 2025
6bf6ff4
Merge branch '688-update-project-team' of https://github.com/Imperial…
Baizurah Mar 8, 2025
5acd9fc
nick
nickwctan Mar 8, 2025
3565507
Fix image file reference for Siti Nor Baizurah (add .png extension)
Baizurah Mar 9, 2025
b17e935
Merge branch '688-update-project-team' of https://github.com/Imperial…
nickwctan Mar 10, 2025
e5ee79f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Mar 10, 2025
9e7c155
Adding team details for Anna Rallings
annarallings Mar 11, 2025
10f1182
Adding missing people
davidorme Apr 7, 2025
fba99b6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 7, 2025
1529517
Adding missing people
davidorme Apr 7, 2025
da21d79
Merge branch '688-update-project-team' of https://github.com/Imperial…
davidorme Apr 7, 2025
8f54111
Forgot to add photos
davidorme Apr 8, 2025
5cd4b29
Priyanga bio
davidorme Apr 8, 2025
eba82e0
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 8, 2025
21092cc
Titles
davidorme Apr 8, 2025
b8b7426
Merge branch '688-update-project-team' of https://github.com/Imperial…
davidorme Apr 8, 2025
5e9129e
Link problem
davidorme Apr 8, 2025
acc7aa5
Merge branch 'develop' into 688-update-project-team
davidorme Apr 8, 2025
3e7c1f6
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Apr 8, 2025
bf1098e
Merge branch 'develop' into 688-update-project-team
davidorme Apr 8, 2025
fc52900
Merge branch 'develop' into 688-update-project-team
davidorme Jun 18, 2025
8bbf4f7
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 18, 2025
167e1b3
Merge branch 'develop' into 688-update-project-team
davidorme Jun 19, 2025
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10 changes: 3 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -31,13 +31,9 @@ The research is based at Imperial College London:

## Project Team

* Professor Robert Ewers
* Olivia Daniel
* Dr. Jaideep Joshi
* Dr. David Orme
* Dr. Vivienne Groner
* Dr. Jacob Cook
* Dr. Taran Rallings
The Virtual Ecosystem is being developed by a international team of researchers lead by
Professor Robert Ewers (Imperial College London). For more details, please see the [team
page](https://virtual-ecosystem.readthedocs.io/en/latest/project_team.html) on our website.

The research team are supported by the Imperial College London
[Research Software
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5 changes: 5 additions & 0 deletions docs/source/_static/css/custom.css
Original file line number Diff line number Diff line change
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img.team-photo {
float: left;
width: 60px;
padding-right: 10px
}
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2 changes: 2 additions & 0 deletions docs/source/_toc.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,8 @@ subtrees:
maxdepth: 0
caption: The Virtual Ecosystem
entries:
- file: project_team
title: The Project Team
- file: virtual_ecosystem/theory/theory
title: Theory
entries:
Expand Down
13 changes: 9 additions & 4 deletions docs/source/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,7 @@
documentation root, use os.path.abspath to make it absolute, like shown here.
"""

import datetime
import sys
import warnings
from dataclasses import dataclass, field
Expand Down Expand Up @@ -48,12 +49,11 @@


# -- Project information -----------------------------------------------------
# Ideally the copyright would have a link to the team page, but neither an RST link, nor
# an HTML <a> link works - they just get rendered as is.

project = "Virtual Ecosystem"
copyright = (
"2022, Rob Ewers, David Orme, Olivia Daniels, Jacob Cook, "
"Jaideep Joshi, Taran Rallings, Vivienne Groner"
)
copyright = f"{datetime.date.today().year}, The Virtual Ecosystem project team"
author = (
"Rob Ewers, David Orme, Olivia Daniels, Jacob Cook, Jaideep Joshi, "
"Taran Rallings, Vivienne Groner"
Expand Down Expand Up @@ -239,6 +239,11 @@ class MyReferenceStyle(AuthorYearReferenceStyle):
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]

# These paths are relative to html_static_path
html_css_files = [
"css/custom.css",
]

html_sidebars = {
"**": ["logo-text.html", "globaltoc.html", "localtoc.html", "searchbox.html"]
}
Expand Down
12 changes: 4 additions & 8 deletions docs/source/index.md
Original file line number Diff line number Diff line change
Expand Up @@ -73,14 +73,10 @@ The research is based at [Imperial College London](https://imperial.ac.uk):

:::{grid-item-card} Project Team

- Professor Robert Ewers
- Olivia Daniel
- Dr. Jaideep Joshi
- Dr. David Orme
- Dr. Vivienne Groner
- Dr. Jacob Cook
- Dr. Taran Rallings
- Professor Priyanga Amarasekare
The project team is an international group of research scientists and software
developers, lead by [Professor Robert Ewers](https://profiles.imperial.ac.uk/r.ewers)
(Imperial College London). For more details, please see our [team
page](project_team.md).

The research team are supported by the Imperial College London
[Research Software Engineering](https://www.imperial.ac.uk/admin-services/ict/self-service/research-support/rcs/service-offering/research-software-engineering/)
Expand Down
259 changes: 259 additions & 0 deletions docs/source/project_team.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,259 @@
---
jupytext:
formats: md:myst
text_representation:
extension: .md
format_name: myst
format_version: 0.13
jupytext_version: 1.17.1
kernelspec:
display_name: Python 3
language: python
name: python3
---

# Project Team

<!-- markdownlint-disable MD034 -->
<!-- The :link: tag requires bare URLs and markdownlint autowraps them in <>
unless this rule is disabled. Do not merge these comments - apparently markdownlint is
fussy about the formatting within the disable comment.
-->

## Project leadership

::::{grid} 1 1 2 2

:::{grid-item-card} Professor Robert Ewers
:margin: 2 2 0 0
:link: https://profiles.imperial.ac.uk/r.ewers

```{image} _static/images/people/rob_ewers.png
:alt: Professor Rob Ewers
:class: team-photo
```

Rob is a data scientist, specialising in biodiversity and whole-system ecology. He is
the project lead for the Stability of Altered Forest Ecosystems (SAFE) Project in Borneo
and principal investigator for the Virtual Ecosystem project. Rob is based at the
Silwood Park campus of Imperial Collge London.
:::

:::{grid-item-card} Olivia Daniel
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/olivia_daniel.png
:alt: Olivia Daniel
:class: team-photo
```

Olivia is the Project Manager and Administrator for the Virtual Ecosystem project. She
is a conservation scientist and is based at the Silwood Park campus of Imperial Collge
London.

:::

:::{grid-item-card} Anna Rallings
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/anna_rallings.png
:alt: Anna Rallings
:class: team-photo
```

Anna is an environmental scientist with a focus on landscape management and applied
ecology. She supports the data science team in development of model parameterization.
Anna is based at the Silwood Park Campus of Imperial College London.
:::

::::

## Code development and model science

::::{grid} 1 1 2 2

:::{grid-item-card} Dr. Jaideep Joshi
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/jaideep_joshi.png
:alt: Dr. Jaideep Joshi
:class: team-photo
```

Jaideep's current research focuses on developing eco-evolutionary vegetation models to
understand the role of biodiversity and adaptation in forest responses to climate
change. He is an Assistant Professor at the Centre for Climate Studies at IIT Bombay.
:::

:::{grid-item-card} Dr. David Orme
:margin: 2 2 0 0
:link: https://profiles.imperial.ac.uk/d.orme

```{image} _static/images/people/david_orme.jpeg
:alt: Dr. David Orme
:class: team-photo
```

David is a data scientist with interests in macroecology, macroevolution and landscape
ecology. He is one of the programmers for the Virtual Ecosystem, with particular focus
on the model core and the plants science model. He is based at the Silwood Park Campus
at Imperial College London.

:::

:::{grid-item-card} Dr. Vivienne Groner
:margin: 2 2 0 0
:link: https://profiles.imperial.ac.uk/v.groner

```{image} _static/images/people/vivienne_groner.jpg
:alt: Dr. Vivienne Groner
:class: team-photo
```

Vivienne is an Earth system scientist with focus on the interaction between climate
change and biodiversity. She is one of the programmers for the Virtual Ecosystem, with
particular focus on the abiotic and hydrology science model. Vivienne is based at the
Silwood Park Campus at Imperial College London.
:::

:::{grid-item-card} Dr. Jacob Cook
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/jacob_cook.jpg
:alt: Dr. Jacob Cook
:class: team-photo
```

Jacob is a microbial ecologist whose work focuses on developing improved representations
of microbial communities in ecological models. He is one of the programmers for the
Virtual Ecosystem, with a particular focus on the soil and litter science models. He is
based at the Silwood Park Campus at Imperial College London.
:::

:::{grid-item-card} Dr. Taran Rallings
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/taran_rallings.jpg
:alt: Dr. Taran Rallings
:class: team-photo
```

Taran is a food-web ecologist with a focus on animal communities and paleoecology. He is
one of the programmers for the Virtual Ecosystem, with a particular focus on the animal
model and trophic interactions. Taran is based at the Silwood Park Campus of Imperial
College London.
:::

:::{grid-item-card} Professor Priyanga Amarasekare
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/priyanga_amarasekare.png
:alt: Professor Priyanga Amarasekare
:class: team-photo
```

Priyanga's research focuses on the role of abiotic environmental variation and biotic
interactions on ecological and evolutionary dynamics, using a combination of
observation, experimentation and mathematical modelling. Priyanga is a Professor in the
Department of Ecology and Evolutionary Biology at UCLA.
:::

:::{grid-item-card} Sally Matson
:margin: 2 2 0 0

```{image} _static/images/people/sally_matson.png
:alt: Sally Matson
:class: team-photo
```

Sally is a software engineer with an academic background that includes climate science
and climate change. As a programmer working on the Virtual Ecosystem, she contributes to
both the core structure and science models.
:::

::::

## Model parameterisation and data science

::::{grid} 1 1 2 2

:::{grid-item-card} Dr. Siti Nor Baizurah Abdul Malik
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/sitinorbaizurah.png
:alt: Dr. Siti Nor Baizurah Abdul Malik
:class: team-photo
```

Baizurah is a herpetologist focusing on life history, animal ecology, taxonomy and
wildlife conservation in Borneo. She is one of the data scientists focusing on animal
model for the Virtual Ecosystem. She is based at SEARRP, Sabah (Malaysia).
:::

:::{grid-item-card} Dr. Lelavathy Samikan Mazilamani
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/lelavathy.jpg
:alt: Dr. Lelavathy Samikan Mazilamani
:class: team-photo
```

Lela is a hydrologist with a particular focus on the hydrological processes and water
quality in tropical ecosystems, especially in Southeast Asia. As one of the data
scientists for the Virtual Ecosystem, Lela contributes to the abiotic model. Lela is
currently based at SEARRP in Kota Kinabalu (Malaysia).
:::

:::{grid-item-card} Dr. Hao Ran Lai
:margin: 2 2 0 0
:link: https://hrlai.netlify.app/

```{image} _static/images/people/hao_ran_lai.jpg
:alt: Dr. Hao Ran Lai
:class: team-photo
```

Hao Ran is a (mostly plant) community ecologist who works on forest dynamics, functional
traits and statistical modelling. He helps with the soil models of Virtual Ecosystem and
is currently based in Aotearoa New Zealand.
:::

:::{grid-item-card} Dr. Nicholas Wei Cheng Tan
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/nick_tan.jpg
:alt: Dr. Nicholas Wei Cheng Tan
:class: team-photo
```

Nicholas is an animal ecologist with interests in phenotypic evolution and the effects
of climate and land use change on biodiversity. He is one of the data scientists for the
Virtual Ecosystem, with a focus on the animal model. Nicholas is currently based in
Johannesburg, South Africa.
:::

:::{grid-item-card} Dr. Arne Scheire
:margin: 2 2 0 0
:link: project_team.html

```{image} _static/images/people/arne_scheire.jpg
:alt: Arne Scheire
:class: team-photo
```

Arne is a plant ecologist with an interest in the functioning, conservation and
management of tropical forests, particularly in Southeast Asia. He is one of the data
scientists for the Virtual Ecosystem, focusing on the plant model. Arne is based at
SEARRP in Kota Kinabalu (Malaysia).
:::

::::