sync metatensor branch with dev #4184
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* draft download Signed-off-by: Yiheng Wang <[email protected]> * update bundle download Signed-off-by: Yiheng Wang <[email protected]> * add url and load Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * rename args and remove a few places Signed-off-by: Yiheng Wang <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix flake8 issue Signed-off-by: Yiheng Wang <[email protected]> * enhance with reviews Signed-off-by: Yiheng Wang <[email protected]> * add instantiate for load Signed-off-by: Yiheng Wang <[email protected]> * fix black error Signed-off-by: Yiheng Wang <[email protected]> * add unittest Signed-off-by: Yiheng Wang <[email protected]> * add load to docs Signed-off-by: Yiheng Wang <[email protected]> * add skip Signed-off-by: Yiheng Wang <[email protected]> * add schemaerror Signed-off-by: Yiheng Wang <[email protected]> * fix partial places Signed-off-by: Yiheng Wang <[email protected]> * download zip bundle Signed-off-by: Yiheng Wang <[email protected]> * [DLMED] restore Exception for test Signed-off-by: Nic Ma <[email protected]> * update ts features Signed-off-by: Yiheng Wang <[email protected]> * add config_files test case Signed-off-by: Yiheng Wang <[email protected]> * enhance docstring example for args_file Signed-off-by: Yiheng Wang <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Nic Ma <[email protected]>
* workaround Signed-off-by: Nic Ma <[email protected]> * [DLMED] fix tifffile issue Signed-off-by: Nic Ma <[email protected]>
… layer options (#4157) * fixed a bug Signed-off-by: dongy <[email protected]> * autofix Signed-off-by: dongy <[email protected]> * update test case Signed-off-by: dongy <[email protected]> Co-authored-by: dongy <[email protected]>
* Redesign whole slide image reading (#4107) * Redesign BaseWSIReader, WSIReader, CuCIMWSIReader Signed-off-by: Behrooz <[email protected]> * Add unittests for WSIReader Signed-off-by: Behrooz <[email protected]> * Add image mode for output validation Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * Update references to new WSIReader Signed-off-by: Behrooz <[email protected]> * Remove legacy WSIReader Signed-off-by: Behrooz <[email protected]> * Update unittests Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * sort imports Signed-off-by: Behrooz <[email protected]> * Clean up imports Signed-off-by: Behrooz <[email protected]> * Update docstrings Signed-off-by: Behrooz <[email protected]> * Update docs and docstrings Signed-off-by: Behrooz <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix a typo Signed-off-by: Behrooz <[email protected]> * Remove redundant checking Signed-off-by: Behrooz <[email protected]> * Update read and other methods Signed-off-by: Behrooz <[email protected]> * Update wsireader to support multi image and update docstrings Signed-off-by: Behrooz <[email protected]> * Make workaround for CuImage objects Signed-off-by: Behrooz <[email protected]> * Add unittests for multi image reading Signed-off-by: Behrooz <[email protected]> * Update a note about cucim Signed-off-by: Behrooz <[email protected]> * Update type hints and docstrings Signed-off-by: Behrooz <[email protected]> * Implement Split transform Signed-off-by: Behrooz <[email protected]> * Add unittests Signed-off-by: Behrooz <[email protected]> * Update formatting Signed-off-by: Behrooz <[email protected]> * Implement SplitDict Signed-off-by: Behrooz <[email protected]> * Add unittests for SplitDict Signed-off-by: Behrooz <[email protected]> * Add docs Signed-off-by: Behrooz <[email protected]> * Remove images from docs Signed-off-by: Behrooz <[email protected]> * Address all comments Signed-off-by: Behrooz <[email protected]> * Add example and size check Signed-off-by: Behrooz <[email protected]> * Update docs Signed-off-by: Behrooz <[email protected]> * Revert references to new wsireader Signed-off-by: Behrooz <[email protected]> * Add missing comma Signed-off-by: Behrooz <[email protected]>
Signed-off-by: Yiheng Wang <[email protected]>
* [DLMED] enhance checkpoint export Signed-off-by: Nic Ma <[email protected]> * [DLMED] update according to comments Signed-off-by: Nic Ma <[email protected]>
Signed-off-by: Behrooz <[email protected]> Co-authored-by: Nic Ma <[email protected]>
* Support new temp dgx runner Signed-off-by: Peixin Li <[email protected]> * atol 1e-5 Signed-off-by: Wenqi Li <[email protected]> Co-authored-by: Wenqi Li <[email protected]>
Signed-off-by: Eric Kerfoot <[email protected]>
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Fixes # .
Description
A few sentences describing the changes proposed in this pull request.
Status
Ready/Work in progress/Hold
Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.