Update pymc dependency to version 5.19

[cpaniaguam]

This pull request includes updates to dependencies in the pyproject.toml file. Namely, it updates of the pymc dependency to a newer version.

Dependency updates:

• pyproject.toml: Updated the pymc dependency from ">=5.16.2,<5.17.0" to "^5.19".

The goal is to ensure this version is compatible with hssm and further investigate #608.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

[AlexanderFengler]

@cpaniaguam what's going on with the tests here? Running for over 3h :0

[cpaniaguam]

@cpaniaguam what's going on with the tests here? Running for over 3h :0

@AlexanderFengler there seems to be a problem with pymc v.5.19 and the environments with Python v.3.10/12. I can't get it to install properly in those environments locally and it seems like in ci gets hung up. @digicosmos86 any ideas?

[digicosmos86]

I don't think this is anything new. We did have tests that ran for this long with certain values. Looks like slice samplers are causing this problem. @AlexanderFengler any idea from the outputs?

[digicosmos86]

@cpaniaguam what do you mean you can't install PyMC 5.19 locally?

[cpaniaguam]

@cpaniaguam what do you mean you can't install PyMC 5.19 locally?

Oh sorry, I meant that I can't install hssm with pymc v5.19 in environments with Python 3.10/12 on my computer using WSL.

[AlexanderFengler]

@digicosmos86 will look at the outputs, but it's a bit weird. Not getting those problems on my PRs. (slow tests ~30min)

[digicosmos86]

@digicosmos86 will look at the outputs, but it's a bit weird. Not getting those problems on my PRs. (slow tests ~30min)

@AlexanderFengler Yeah checked with Carlos about it but it seems that some tests just consistently fail after only updating PyMC. That's why we are moving to uv which allows us to create environments with different python versions so we can test these things locally

[AlexanderFengler]

@digicosmos86 ok sounds reasonable.
Hopefully something minor.

[AlexanderFengler]

Taken care of in the context of #607 now.
Not entirely sure what the rootcause was, but I upgrade a couple version restrictions and tests are passing. @cpaniaguam @digicosmos86