Update cmake & clang tidy & rewriting binary read-in

.clang-tidy

@@ -9,6 +9,7 @@ Checks: >
   cppcoreguidelines-*,
   hicpp-*,
   misc-*,
+  -misc-include-cleaner,
   modernize-*,
   -modernize-use-trailing-return-type,
   mpi-*,

.github/pull_request_template.md

@@ -5,6 +5,5 @@ Miscellaneous items that may need to be done when making a PR:
 - [ ] Documentation related to this PR is up to date (Doxygen format)
 - [ ] Unit test(s)
 - [ ] Code is properly formatted
-- [ ] Application update script is up to date
 - [ ] PR labels are applied
 - [ ] Issues are linked

.github/workflows/clang-tidy.yml

@@ -51,5 +51,4 @@ jobs:
 
         - name: Run clang-tidy
           run: |
-            ./contrib/utilities/clang_tidy.sh -j$(nproc) -D REDUCED_TEMPLATES=ON
-
+            ./contrib/utilities/clang_tidy.sh -j$(nproc)

.github/workflows/compile_applications.yml

@@ -39,16 +39,17 @@ jobs:
 
       - name: Compile PRISMS-PF
         run: |
-          cmake -G Ninja .
+          cmake -G Ninja \
+          -D BUILD_APPLICATIONS=ON \
+          -D CMAKE_INSTALL_PREFIX=/usr/local \
+          .
           ninja -j $(nproc)
 
-
       - name: Compile PRISMS-PF applications
         timeout-minutes: 30
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/automatic_tests
-          python3 application_debug_test.py --no-run
+          ninja -j $(nproc) install
 

.github/workflows/cppcheck.yml

@@ -49,5 +49,5 @@ jobs:
 
         - name: Run cppcheck
           run: |
-            ./contrib/utilities/cppcheck.sh -j$(nproc) -D REDUCED_TEMPLATES=ON
+            ./contrib/utilities/cppcheck.sh -j$(nproc)
 

.github/workflows/linux.yml

@@ -40,36 +40,42 @@ jobs:
 
       - name: Compile PRISMS-PF
         run: |
-          cmake -G Ninja .
+          cmake -G Ninja \
+          -D UNIT_TESTS=ON \
+          -D REGRESSION_TESTS=ON \
+          -D CMAKE_INSTALL_PREFIX=/usr/local \
+          .
           ninja -j $(nproc)
 
       - name: Run PRISMS-PF unit tests
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/unit_tests
-          cmake -G Ninja .
-          ninja -j $(nproc)
-          ctest
+          ninja run_tests
 
       - name: Run PRISMS-PF automatic tests in serial
         timeout-minutes: 30
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/automatic_tests
-          python3 run_automatic_tests.py
+          ninja install
 
       - name: Run PRISMS-PF automatic tests in parallel
         timeout-minutes: 30
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/automatic_tests
-          python3 run_automatic_tests.py -j 2
+          cmake -G Ninja \
+          -D UNIT_TESTS=ON \
+          -D REGRESSION_TESTS=ON \
+          -D N_THREADS=2 \
+          -D CMAKE_INSTALL_PREFIX=/usr/local \
+          .
+          ninja install
+
   linux-optimizations:
     runs-on: [ubuntu-22.04]
     timeout-minutes: 120
@@ -84,36 +90,39 @@ jobs:
 
       - name: Compile PRISMS-PF
         run: |
-          cmake -G Ninja -D ADDITIONAL_OPTIMIZATIONS=ON .
+          cmake -G Ninja \
+          -D ADDITIONAL_OPTIMIZATIONS=ON \
+          -D UNIT_TESTS=ON \
+          -D REGRESSION_TESTS=ON \
+          -D CMAKE_INSTALL_PREFIX=/usr/local \
+          .
           ninja -j $(nproc)
 
       - name: Run PRISMS-PF unit tests
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/unit_tests
-          cmake -G Ninja .
-          ninja -j $(nproc)
-          ctest
+          ninja run_tests
 
       - name: Run PRISMS-PF automatic tests in serial
         timeout-minutes: 30
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/automatic_tests
-          python3 run_automatic_tests.py
+          ninja install
 
       - name: Run PRISMS-PF automatic tests in parallel
         timeout-minutes: 30
         run: |
           export OMPI_ALLOW_RUN_AS_ROOT=1
           export OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1
 
-          cd tests/automatic_tests
-          python3 run_automatic_tests.py -j 2
-
-
-
+          cmake -G Ninja \
+          -D UNIT_TESTS=ON \
+          -D REGRESSION_TESTS=ON \
+          -D N_THREADS=2 \
+          -D CMAKE_INSTALL_PREFIX=/usr/local \
+          .
+          ninja install

.gitignore

@@ -9,9 +9,14 @@ CTest*
 **expand_template_instantiations_exe
 **.inst
 
+# The default install folder & files
+install/
+install_manifest.txt
+
 # Config files
 include/prismspf/config.h
-cmake/prisms_pf_config.cmake
+cmake/prisms_pf-config.cmake
+cmake/prisms_pf-targets.cmake
 cmake/templates
 compile_commands.json
 
@@ -33,13 +38,14 @@ compile_commands.json
 *.a
 
 # Executables
-main
+main-release
 main-debug
 
 # Output files
 *.vtu
 *.pvtu
 *.vtk
 *.log
+*.bin
 output.txt
 error.txt