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trivy.yml
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Filter reads for gc bias (mapq and interval) dsp-appsec-trivy #678: Pull request #2030 synchronize by bwlang
1m 34s bwlang:filter_gc_bias
bwlang:filter_gc_bias
1m 34s
Add molecular position stratification to CollectSamErrorMetrics dsp-appsec-trivy #677: Pull request #2035 synchronize by yfarjoun
1m 39s yfarjoun:yf_add_end_of_insert_stratifier
yfarjoun:yf_add_end_of_insert_stratifier
1m 39s
switches from short to int for physical locations (avoiding overflow and inaccurate markdups) dsp-appsec-trivy #676: Pull request #2034 synchronize by bwlang
1m 40s bwlang:optical_dup_fix
bwlang:optical_dup_fix
1m 40s
Add molecular position stratification to CollectSamErrorMetrics dsp-appsec-trivy #675: Pull request #2035 synchronize by yfarjoun
1m 45s yfarjoun:yf_add_end_of_insert_stratifier
yfarjoun:yf_add_end_of_insert_stratifier
1m 45s
Add molecular position stratification to CollectSamErrorMetrics dsp-appsec-trivy #674: Pull request #2035 synchronize by yfarjoun
1m 35s yfarjoun:yf_add_end_of_insert_stratifier
yfarjoun:yf_add_end_of_insert_stratifier
1m 35s
Add molecular position stratification to CollectSamErrorMetrics dsp-appsec-trivy #673: Pull request #2035 synchronize by yfarjoun
1m 47s yfarjoun:yf_add_end_of_insert_stratifier
yfarjoun:yf_add_end_of_insert_stratifier
1m 47s
Add molecular position stratification to CollectSamErrorMetrics dsp-appsec-trivy #672: Pull request #2035 opened by yfarjoun
1m 36s yfarjoun:yf_add_end_of_insert_stratifier
yfarjoun:yf_add_end_of_insert_stratifier
1m 36s
switches from short to int for physical locations (avoiding overflow and inaccurate markdups) dsp-appsec-trivy #671: Pull request #2034 synchronize by bwlang
1m 29s bwlang:optical_dup_fix
bwlang:optical_dup_fix
1m 29s
switches from short to int for physical locations (avoiding overflow and inaccurate markdups) dsp-appsec-trivy #670: Pull request #2034 opened by bwlang
1m 36s bwlang:optical_dup_fix
bwlang:optical_dup_fix
1m 36s
added parallelization to the actual cross-checking part of Crosscheck… dsp-appsec-trivy #669: Pull request #2033 opened by yfarjoun
1m 35s yfarjoun:yf_use_threads_in_crosscheck
yfarjoun:yf_use_threads_in_crosscheck
1m 35s
Add draft CONTRIBUTING.md file. dsp-appsec-trivy #668: Pull request #2031 opened by yfarjoun
1m 36s yfarjoun:yf_contributing
yfarjoun:yf_contributing
1m 36s
Filter reads for gc bias (mapq and interval) dsp-appsec-trivy #667: Pull request #2030 synchronize by bwlang
1m 30s bwlang:filter_gc_bias
bwlang:filter_gc_bias
1m 30s
Filter reads for gc bias (mapq and interval) dsp-appsec-trivy #666: Pull request #2030 opened by bwlang
1m 29s bwlang:filter_gc_bias
bwlang:filter_gc_bias
1m 29s
protect collect rnaseqmetrics from pair orientation assert dsp-appsec-trivy #665: Pull request #2027 opened by yfarjoun
1m 34s yfarjoun:yf_protect_collectRNAseqmetrics_from_pairOrientation_assert
yfarjoun:yf_protect_collectRNAseqmetrics_from_pairOrientation_assert
1m 34s
Properly plumbs the CREATE_INDEX logic in FilterVcf. dsp-appsec-trivy #664: Pull request #2025 synchronize by yfarjoun
1m 44s yfarjoun:yf_enable_no_index_in_filterVcf
yfarjoun:yf_enable_no_index_in_filterVcf
1m 44s
Properly plumbs the CREATE_INDEX logic in FilterVcf. dsp-appsec-trivy #663: Pull request #2025 synchronize by yfarjoun
1m 41s yfarjoun:yf_enable_no_index_in_filterVcf
yfarjoun:yf_enable_no_index_in_filterVcf
1m 41s
Properly plumbs the CREATE_INDEX logic in FilterVcf. dsp-appsec-trivy #662: Pull request #2025 opened by yfarjoun
1m 32s yfarjoun:yf_enable_no_index_in_filterVcf
yfarjoun:yf_enable_no_index_in_filterVcf
1m 32s
Prevent MBA from re-sorting input on error if the input is a pipe dsp-appsec-trivy #661: Pull request #2024 opened by yfarjoun
1m 36s yfarjoun:yf_avoid_resorting_on_non-regular_files
yfarjoun:yf_avoid_resorting_on_non-regular_files
1m 36s
Address CVE dsp-appsec-trivy #660: Pull request #2022 opened by bbimber
1m 28s bbimber:cve
bbimber:cve
1m 28s
Yf make revert sam robust to errant XQ and XB tags dsp-appsec-trivy #659: Pull request #2021 opened by yfarjoun
1m 22s yfarjoun:yf_make_revert_sam_robust_to_XQ
yfarjoun:yf_make_revert_sam_robust_to_XQ
1m 22s
A few fixes to crosscheckfingerprints dsp-appsec-trivy #658: Pull request #2018 synchronize by kachulis
1m 22s ck_crosscheck_multiple_records_per_site
ck_crosscheck_multiple_records_per_site
1m 22s
A few fixes to crosscheckfingerprints dsp-appsec-trivy #657: Pull request #2018 synchronize by kachulis
1m 33s ck_crosscheck_multiple_records_per_site
ck_crosscheck_multiple_records_per_site
1m 33s
A few fixes to crosscheckfingerprints dsp-appsec-trivy #656: Pull request #2018 opened by kachulis
1m 21s ck_crosscheck_multiple_records_per_site
ck_crosscheck_multiple_records_per_site
1m 21s
Update htsjdk to 4.3.0 dsp-appsec-trivy #655: Pull request #2017 synchronize by lbergelson
1m 24s lb_test_htsjdk
lb_test_htsjdk
1m 24s
Update htsjdk to 4.3.0 dsp-appsec-trivy #654: Pull request #2017 opened by lbergelson
1m 37s lb_test_htsjdk
lb_test_htsjdk
1m 37s